species:   Artha
pid:       MI0005403
parent:    ath-MIR848
paralog:   
locus:     5:4479397-4479591
matures:   ['UGACAUGGGACUGCCUAAGCUA', 'GCUUGGCAAUCUCAUGUCAAA']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 5:4479397-4479591

0 out of bounds
150 alignments
150 proper strand
122 stranded perfect matches

                                               ***********************                                                       ***********************                                               
AAAACUUUCAGAUUGCACAAGAGAAUAUGAAAAAGUAUUAACACAAGCCUUAUAGCUUGGCAAUCUCAUGUCAAAUAAGGAAAAGAAGAGGAACCCAAGGUAUGUUUCUCAUCUACCUUCUUUGACAUGGGACUGCCUAAGCUAAAGGCUUGCCAUGUUAUCACAUCCUUCUUUCAUUUCGUCGCAACCACUUUA
..........(.(((((((((.(((...(((...((..(((((((((((((.((((((((((.((((((((((((.((((...(((.(((((((.........))))))).))).)))).)))))))))))).)))).))))))))))))))...)))))..))....))).))).))).)).)))).)......
--------------------------------------------------------------------------------------------------------------------------UGACAUGGGACUGCCUAAGCUA--------------------------------------------------- l=22 a=15 c
------------------------------------------------------GCUUGGCAAUCUCAUGUCAAA------------------------------------------------------------------------------------------------------------------------ l=21 a=0 c*
-------------------------------------------------UUAUAGCUUGGCAAUCUCAUG----------------------------------------------------------------------------------------------------------------------------- l=21 a=36 ma
-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUAAAGG----------------------------------------------- l=21 a=0 ma*

-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUAAAGGC---------------------------------------------- l=22 a=12 
-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUAAAGGu---------------------------------------------- l=22 a=4 
-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUAAAGGa---------------------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUAAAGGCUU-------------------------------------------- l=24 a=33 
-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUAAAGGCUg-------------------------------------------- l=24 a=1 
-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUAAAGGCUc-------------------------------------------- l=24 a=6 
-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUAgAGGCUU-------------------------------------------- l=24 a=1 
-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUAAAGGCUa-------------------------------------------- l=24 a=1 
-------------------------------------------------------------------------------------------------------------------------------UGGGACUGCCUAAGCUgAAGGCUU-------------------------------------------- l=24 a=1 
--------------------------------------------------------------------------------------------------------------------------UGACAUGGGACUGCCUAAGC----------------------------------------------------- l=20 a=2 
--------------------------------------------------------------------------------------------------------------------------UGACAUGGGACUGCCUAAGa----------------------------------------------------- l=20 a=1 
--------------------------------------------------------------------------------------------------------------------------UGACAUGGGACUGCCUAAGCU---------------------------------------------------- l=21 a=4 
--------------------------------------------------------------------------------------------------------------------------UGACAUGGGACUGCCUAAGCUA--------------------------------------------------- l=22 a=15 (c)
--------------------------------------------------------------------------------------------------------------------------UGACAUGGGACUGCCUAAGCUc--------------------------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------------------------------UUGACAUGGGACUGCCUAAGC----------------------------------------------------- l=21 a=18 
-------------------------------------------------------------------------------------------------------------------------UUGACAUGGGACUGCCUAAGu----------------------------------------------------- l=21 a=3 
----------------------------------------------------------------------------------------------------------------------UCUUUGACAUGGGACUGCCUAAGu----------------------------------------------------- l=24 a=1 
-----------------------------------------------------------------UCAUGUCAAAUAAGGAAAAGAAGAGG-------------------------------------------------------------------------------------------------------- l=26 a=1 
-----------------------------------------------------------------UCAUGUCAAAUAAGGAAAAGAAGAGa-------------------------------------------------------------------------------------------------------- l=26 a=1 
-------------------------------------------------UUAUAGCUUGGCAAUCUCc------------------------------------------------------------------------------------------------------------------------------- l=19 a=1 
-------------------------------------------------UUAUAGCUUGGCAAUCUCAUG----------------------------------------------------------------------------------------------------------------------------- l=21 a=36 (ma)
-------------------------------------------------UUAUAGCUUGGCAAUCUCAUa----------------------------------------------------------------------------------------------------------------------------- l=21 a=4 
-------------------------------------------------UUAUAGCUUGGgAAUCUCAUG----------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
----------------------------------------------GCCUUAUAGCUUGGCAAUCUCAUG----------------------------------------------------------------------------------------------------------------------------- l=24 a=1 

mb-01111
ax-1011011
ku-01
ss-111111111100
fn-111
